Publications
Peer-reviewed papers, patents, and citations from the TeselaGen team and the broader scientific community.
Papers by TeselaGen
Research authored or co-authored by members of the TeselaGen team.
A Procedural Framework for Benchmarking Biofoundry Capabilities
Nathan J. Hillson
Perspectives for self-driving labs in synthetic biology
Hector G. Martin, et al.
Ten simple rules for managing laboratory information
Casey-Tyler Berezin, et al.
Automated platform for the plasmid construction process
Alberto A. Nava, et al.
Engineering Biology for Climate and Sustainability: A research roadmap for a cleaner future
Engineering Biology Research Consortium
Making security viral: shifting engineering biology culture and publishing
Rebecca Mackelprang, et al.
Multiomics data collection, visualization, and utilization for guiding metabolic engineering
Somtirtha Roy, et al.
BioParts—a biological parts search portal and updates to the ICE parts registry software platform
Hector A. Plahar, et al.
Synthetic biology: at the crossroads of genetic engineering and human therapeutics
Jennifer Cable, et al.
An integrated computer-aided design and manufacturing workflow for synthetic biology
Ernst Oberortner, et al.
Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism
Jie Zhang, et al.
Combinatorial-hierarchical DNA library design using the TeselaGen DESIGN Module with j5
Michael J. Fero, et al.
DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors
Gledon Doci, et al.
Repurposing a microfluidic formulation device for automated DNA construction
Garima Goyal, et al.
Building a global alliance of biofoundries
Nathan Hillson, et al.
SBOL visual: a graphical language for genetic designs
Jacqueline Y. Quinn, et al.
PR-PR: cross-platform laboratory automation system
Gregory Linshiz, et al.
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
Michal Galdzicki, et al.
j5 DNA assembly design automation
Nathan J. Hillson
Proposed design of distributed macroalgal biorefineries: thermodynamics, bioconversion technology, and sustainability implications
Alexander Golberg, et al.
PaR-PaR laboratory automation platform
Gregory Linshiz, et al.
Synthetic Biology Open Language Visual: An Open-Source Graphical Notation for Synthetic Biology
Jacqueline Quinn, et al.
Synthetic biology open language (SBOL) version 1.1.0
Michal Galdzicki, et al.
Publications Citing TeselaGen
Independent research that references or builds upon TeselaGen technology.
Atypical contribution of caspase-3 to melanoma cancer cell motility by regulation of coronin 1B activity
Kevin Berthenet, et al.
The Convergence of AI and Synthetic Biology: The Looming Deluge
Cindy Vindman, et al.
Data-driven learning of structure augments quantitative prediction of biological responses
Yuanchi Ha, et al.
AutoESDCas: A Web-Based Tool for the Whole-Workflow Editing Sequence Design Based on CRISPR/Cas
Chunhe Yang, et al.
Designing a synthetic moss genome using GenoDesigner
Wenfei Yu, et al.
teemi: An open-source literate programming approach for iterative design-build-test-learn cycles
Søren D. Petersen, et al.
Synthetic biology open language (SBOL) version 3.1.0
Lukas Buecherl, Chris J. Myers
Literate programming for iterative design-build-test-learn cycles in bioengineering
Søren Petersen, et al.
Biological and Environmental Research network requirements review final report
Jason Zurawski, et al.
Identification of optimal sgRNA candidates for mutagenesis of the ALS1 gene in Ipomoea batatas
Neda Kianpour
Tracking of plasmodesmata localization with the use of fluorescently labelled VAP27 protein
Irina Kulamikhina, Natalia Kanunnikova, Olga Selezneva
Accelerating engineered microbe optimization through machine learning and multi-omics datasets
Hector Garcia Martin
Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale
Fungmin Eric Liew, et al.
Engineering genetic circuits: advancements in genetic design automation tools and standards
Lukas Buecherl, Chris J. Myers
Bioinformational trends in grape and wine biotechnology
Thomas A. Dixon, Thomas C. Williams, Isak S. Pretorius
Automation and analysis of high-dimensionality experiments in biocatalytic reaction screening
Shama Chilakwad
New synthetic biology tools for metabolic control
Xueqin Lv, et al.
Machine learning guided batched design of a bacterial Ribosome Binding Site
Mengyan Zhang, et al.
Genetic Circuit Design Principles
Jing Wui Yeoh, et al.
Construction of multiscale genome-scale metabolic models: Frameworks and challenges
Xinyu Bi, et al.
The mitochondrial genome and Epigenome of the Golden lion Tamarin from fecal DNA using Nanopore adaptive sequencing
Nicole Wanner, et al.
Thailand Synthetic Biology Ecosystem Assessment and Recommendations
Innovation Policy Council
Setting up an automated biomanufacturing laboratory
Marilene Pavan
Developing Novel Methods for Co-translational Studies of Membrane Protein Folding
Grant Pellowe
Aquarium: open-source laboratory software for design, execution and data management
Justin Vrana, et al.
CDMOs Embrace Industry 4.0 to Satisfy Customer Demand
Gareth John Macdonald
SynBiopython: an open-source software library for Synthetic Biology
Jing Wui Yeoh, et al.
Commercial Biomolecules
Basanta Kumara Bahera, Ram Prasad, Shyambhavee Behera
The grey zone of cyber-biological security
Thom Dixon
Synthetic biology open language (SBOL) version 3.0.0
Hasan Baig, et al.
Cell-free biocatalysis for the production of platform chemicals
Peter L. Bergquist, Sana Siddiqui, Anwar Sunna
Domain interactions determine the conformational ensemble of the periplasmic chaperone SurA
Dagan C. Marx, et al.
Drawing on the past to shape the future of synthetic yeast research
Thomas A. Dixon, Isak S. Pretorius
Innovation ecosystems in the bioeconomy
Jim Philp, David Winickoff
Better research by efficient sharing: evaluation of free management platforms for synthetic biology designs
Uriel Urquiza-García, et al.
Definitive demonstration by synthesis of genome annotation completeness
Paul R. Jaschke, et al.
Microsoft makes splash in AI-enabled lab solutions
Eric Smalley
Cyberbiosecurity for biopharmaceutical products
Jennifer L. Mantle, et al.
Life Formed: Evolutionary Design and the Futures of a Political Biology
Aubrey M. Yee
Models for DNA design tools: The trouble with metaphors in synthetic biology
Erika Szymanski
Methods for predictable and accelerated engineering of metabolism in eukaryotes
Søren Dalsgård Petersen
Gene design goes automatic
Anna Nowogrodzki
Genetics and Genetic Engineering
Tomas Cannon
US Department of Energy Bioenergy Research Centers: 10-Year Retrospective
N. Kent Peters, et al.
A standard-enabled workflow for synthetic biology
Chris J. Myers, et al.
Design automation in synthetic biology
Evan Appleton, et al.
Genetic constructor: an online DNA design platform
Maxwell Bates, et al.
Software Compliance Testing For The Synthetic Biology Open Language
Meher Samineni
Genotype specification language
Erin H. Wilson, et al.
Design for the modern prometheus: towards an integrated biodesign workflow
Sunanda Sharma
An Investigation of Innovative Energy Technologies Entering the Market between 2009-2015
Lindsay M. Steele
The synthetic biology open language
Chris Myers, et al.
DNA assembly tools and strategies for the generation of plasmids
Chang-Ho Baek, et al.
Seeking Better Biofuels
Melody M. Bomgardner
Molecular genetic techniques for algal bioengineering
Kenan Jijakli, et al.
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning
Cyrille Pauthenier, Jean-Loup Faulon
Platforms for genetic design automation
Chris J. Myers
Patents
Intellectual property protecting TeselaGen\u2019s innovations in synthetic biology and machine learning.
Method, Apparatus, And Computer-readable Medium For Optimized Partitioning For Assembly Of Nucleic Acid Sequences
Eduardo Abeliuk, et al.
Method, apparatus, and computer-readable medium for efficiently optimizing a phenotype with a combination of a generative and a predictive model
Eduardo Abeliuk, et al.
Scar-less multi-part DNA assembly design automation
Nathan J. Hillson
Method, apparatus, and computer-readable medium for efficiently optimizing a phenotype with a specialized prediction model
Eduardo Abeliuk, et al.
Method, apparatus, and computer-readable medium for efficiently optimizing a phenotype with a combination of a generative and a predictive model
Eduardo Abeliuk, et al.
Method, apparatus, and computer-readable medium for optimal pooling of nucleic acid samples for next generation sequencing
Eduardo Abeliuk, et al.
Scar-less multi-part DNA assembly design automation
Nathan J. Hillson
Scar-less multi-part DNA assembly design automation
Nathan J. Hillson
Compositions and methods for identifying the essential genome of an organism
Beat Christen, Mike Fero, Eduardo Abeliuk
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